Experimental Design

In STATegra we have generated several omics data types: RNA-seq, miRNA-seq, RRBS-Seq, DNase-seq, Proteomics and Metabolomics. For each data-type we profiled Ikaros and Control samples for five times points after Taxomifen induction (0h, 2h, 6h, 12h, 18h and 24h). Depending on the omic-type between 3 and 5 replicates were considered per condition and time. The following picture summarises the experimental design briefly.

 

F3

 

The present status of the data generation and process is:

Technology Planned samples Raw Files Processed Files Due complete set*
mRNA-seq 36 36 (100%) 36 (100%) completed
miRNA-seq 36 38 (105%) 38 (105%) completed
RRSB-seq 36    12 (33%) 12 (33%) Oct-14
DNase-seq 36 36 (100%) 36 (100%) completed
ChIP-seq NA 6 (previous data) 6 (previous data)
Proteomics 36 36 (100%) 36 (80%) Sep-14
Metabolomics 36 48 (125%) 48 (125%) completed

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Email: info@stategra.eu

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